add_names

Here we add the names of the transcription factors (Tfs) as rownames and names of the target genes as column names to the adjacency matrix A.

Provides an implementation of Regularized LS-TreeBoost & LAD-TreeBoost algorithm for Regulatory Network inference from any type of expression data (Microarray/RNA-seq etc).

Raghvendra Mall

RGBM

LS-TreeBoost and LAD-TreeBoost for Gene Regulatory Network
Reconstruction

Khalid Kunji

Melissa O'Neill

add_names function

<dl> <dt>A</dt>
<dd>Adjacency matrix A obtained as a result of GBM procedure.</dd> <dt>tfs</dt>
<dd>List of names of transcription factors.</dd> <dt>targets</dt>
<dd>List of names of target genes.</dd></dl>

Arguments

Raghvendra Mall &lt;rmall@hbku.edu.qa&gt;

Author

Add row and column names to the adjacency matrix A — add_names

<dl>

 <dt>A</dt>
<dd>Adjacency matrix A obtained as a result of GBM procedure.</dd>

 <dt>tfs</dt>
<dd>List of names of transcription factors.</dd>

 <dt>targets</dt>
<dd>List of names of target genes.</dd>

</dl>

add_names: Add row and column names to the adjacency matrix A

Description

Usage

Arguments

Author

Details