normalize_matrix_colwise

We perform a column normalization on an adjacency matrix A equivalent to inferred GRN

Provides an implementation of Regularized LS-TreeBoost & LAD-TreeBoost algorithm for Regulatory Network inference from any type of expression data (Microarray/RNA-seq etc).

Raghvendra Mall

RGBM

LS-TreeBoost and LAD-TreeBoost for Gene Regulatory Network
Reconstruction

Khalid Kunji

Melissa O'Neill

normalize_matrix_colwise function

<dl> <dt>A</dt>
<dd>Inferred GRN in the form of Ntfs-by-Ntargets matrix</dd> <dt>Ntargets</dt>
<dd>Total number of target genes used in the experiment</dd></dl>

Arguments

Raghvendra Mall &lt;rmall@hbku.edu.qa&gt;

Author

Column normalize the obtained adjacency matrix — normalize_matrix_colwise

<dl>

 <dt>A</dt>
<dd>Inferred GRN in the form of Ntfs-by-Ntargets matrix</dd>

 <dt>Ntargets</dt>
<dd>Total number of target genes used in the experiment</dd>

</dl>

normalize_matrix_colwise: Column normalize the obtained adjacency matrix

Description

Usage

Value

Arguments

Author