apply_row_deviation

Inferred GRN in the form of Ntfs-by-Ntargets matrix

Total number of transcription factors used in the experiment.

Ntfs

Total number of target genes used in the experiment

Ntargets

This function performs a row-wise standard deviation of network A to generate an S1 matrix which is then used to modify the weights in network A

Provides an implementation of Regularized LS-TreeBoost & LAD-TreeBoost algorithm for Regulatory Network inference from any type of expression data (Microarray/RNA-seq etc). See Mall et al (2017) <doi:10.1101/132670>.

apply_row_deviation: Apply row-wise deviation on the inferred GRN

Description

Usage

Arguments

Value