MTBLS579

The dataset was retrieved from MetaboLights with the 
identifier number MTBLS79 <a href="https://www.ebi.ac.uk/metabolights/MTBLS579">https://www.ebi.ac.uk/metabolights/MTBLS579</a>.
Two groups from the entire study was downloaded: control and S. typhi
carriage. The name files of control group are: 08GB, 09GB, and 14GB,
which has the following native name 08_GB.cdf, 14_GB.cdf, and 09_GB.cdf in the
MetaboLights database. For the S. typhi group the names are:
34GB, 24GB, 29GB, which has the native name of 34_GB.cdf, 24_GB.cdf and
29_GB.cdf in MetaboLights database.
Due to the large size of chromatograms, these data is a subset of the whole
chromatograms from 7 min to 18 min of chromatografic run. If you would
like to acces the whole formated chromatograms, please go to 
<a href="https://github.com/DanielQuiroz97/MTBLS579">https://github.com/DanielQuiroz97/MTBLS579</a>.
The original study was developed by
 Nasstrom2018;textualRGCxGC.

datasets

MetaboLights

Toolbox for chemometrics analysis of bidimensional gas
chromatography data. This package import data for common scientific data
format (NetCDF) and fold it to 2D chromatogram. Then, it can perform
preprocessing and multivariate analysis. In the preprocessing algorithms,
baseline correction, smoothing, and peak alignment are available.
While in multivariate analysis, multiway principal component analysis is
incorporated.

Cristian Quiroz-Moreno

RGCxGC

Preprocessing and Multivariate Analysis of Bidimensional Gas
Chromatography Data

Guilherme L. Alexandrino

Noroska G.S. Mogollón

MTBLS579 function

A joined_chrom object containing four slots:<dl>
 <dt>chromatograms</dt>
<dd>A named list with the two-dimensional chromatograms</dd> <dt>groups</dt>
<dd>The metadata containing two varaibles and six observations</dd> <dt>time</dt>
<dd>The retantion time range of the chromatographic run</dd> <dt>mod_time</dt>
<dd>The modulation time</dd>
</dl>

Format

The dataset was retrieved from MetaboLights with the 
identifier number MTBLS79 <a href='https://www.ebi.ac.uk/metabolights/MTBLS579'>https://www.ebi.ac.uk/metabolights/MTBLS579</a>.
Two groups from the entire study was downloaded: control and S. typhi
carriage. The name files of control group are: 08GB, 09GB, and 14GB,
which has the following native name 08_GB.cdf, 14_GB.cdf, and 09_GB.cdf in the
MetaboLights database. For the S. typhi group the names are:
34GB, 24GB, 29GB, which has the native name of 34_GB.cdf, 24_GB.cdf and
29_GB.cdf in MetaboLights database.
Due to the large size of chromatograms, these data is a subset of the whole
chromatograms from 7 min to 18 min of chromatografic run. If you would
like to acces the whole formated chromatograms, please go to 
<a href='https://github.com/DanielQuiroz97/MTBLS579'>https://github.com/DanielQuiroz97/MTBLS579</a>.
The original study was developed by
 Nasstrom2018;textualRGCxGC.

Chromatograms from Dioagnostic Metabolite Biomarkers 
        of Chronic Typhoid Carraige study — MTBLS579

A joined_chrom object containing four slots:<dl>
 <dt>chromatograms</dt>
<dd>A named list with the two-dimensional chromatograms</dd>

 <dt>groups</dt>
<dd>The metadata containing two varaibles and six observations</dd>

 <dt>time</dt>
<dd>The retantion time range of the chromatographic run</dd>

 <dt>mod_time</dt>
<dd>The modulation time</dd>


</dl>

MTBLS579: Chromatograms from Dioagnostic Metabolite Biomarkers of Chronic Typhoid Carraige study

Description

Usage

Arguments

Format

References