RGSEA (version 1.6.2)

RGSEA-package: Random Gene Set Enrichment Analysis (RGSEA)

Description

This is the package for similarity identifucation and classification of transcriptome data

Details

Package:

RGSEA

Type:

Package

Version:

1.0

Date:

2014-04-22

License:

GPL(>=3)

~~ An overview of how to use the package, including the most important functions ~~

References

~~ Literature or other references for background information ~~

See Also

Song L, Langfelder P, Horvath S. Random generalized linear model: a highly accurate and interpretable ensemble predictor[J]. BMC bioinformatics, 2013, 14(1): 5. Subramanian A, Tamayo P, Mootha V K, et al. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles[J]. Proceedings of the National Academy of Sciences of the United States of America, 2005, 102(43): 15545-15550.

Examples

if(interactive()) {
    data(e1)
    data(e2)
    RGSEAfix(e1,e2, queryclasses=colnames(e1), refclasses=colnames(e2),      
random=20000, featurenum=1000, iteration=100)->test
}