RISmed v2.1.7


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Download Content from NCBI Databases

A set of tools to extract bibliographic content from the National Center for Biotechnology Information (NCBI) databases, including PubMed. The name RISmed is a portmanteau of RIS (for Research Information Systems, a common tag format for bibliographic data) and PubMed.

Functions in RISmed

Name Description
Affiliation-methods ~~ Methods for Function Affiliation in Package RISmed ~~
Affiliation Extracts Affiliation from Medline object.
Agency-methods ~~ Methods for Function Agency in Package RISmed ~~
Agency Extracts Agency from Medline object.
DayPmc-methods ~~ Methods for Function DayPmc in Package RISmed ~~
DayPmc Extracts DayPmc from Medline object.
Acronym-methods ~~ Methods for Function Acronym in Package RISmed ~~
Acronym Extracts Acronym from Medline object.
CopyrightInformation-methods ~~ Methods for Function CopyrightInformation in Package RISmed ~~
CopyrightInformation Extracts CopyrightInformation from Medline object.
DayAccepted-methods ~~ Methods for Function DayAccepted in Package RISmed ~~
DayAccepted Extracts DayAccepted from Medline object.
DayPubmed-methods ~~ Methods for Function DayPubmed in Package RISmed ~~
DayPubmed Extracts DayPubmed from Medline object.
HourEpublish-methods ~~ Methods for Function HourEpublish in Package RISmed ~~
HourEpublish Extracts HourEpublish from Medline object.
MedlinePgn Extracts MedlinePgn from Medline object.
MedlineTA-methods ~~ Methods for Function MedlineTA in Package RISmed ~~
Cited-methods ~~ Methods for Function Cited in Package RISmed ~~
Cited Number of citations
DayEpublish-methods ~~ Methods for Function DayEpublish in Package RISmed ~~
DayEpublish Extracts DayEpublish from Medline object.
Mesh Extracts Mesh headings from Medline object.
MinuteAccepted-methods ~~ Methods for Function MinuteAccepted in Package RISmed ~~
MonthPmc Extracts MonthPmc from Medline object.
MonthPpublish-methods ~~ Methods for Function MonthPpublish in Package RISmed ~~
PMID Extracts PMID from Medline object.
PublicationStatus-methods ~~ Methods for Function PublicationStatus in Package RISmed ~~
RefSource-methods ~~ Methods for Function RefSource in Package RISmed ~~
RefSource Extracts RefSource from Medline object.
CollectiveName-methods ~~ Methods for Function CollectiveName in Package RISmed ~~
CollectiveName Extracts CollectiveName from Medline object.
EUtilsSummary-class Class "EUtilsSummary"
EUtilsSummary Get summary of NCBI EUtils query
ArticleId-methods ~~ Methods for Function ArticleId in Package RISmed ~~
ArticleId Extracts ArticleId from Medline object.
Author-methods ~~ Methods for Function Author in Package RISmed ~~
Author Extracts Author from Medline object.
Country-methods ~~ Methods for Function Country in Package RISmed ~~
Country Extracts Country from Medline object.
EUtilsGet Results of an NCBI EUtils query
HourPmc-methods ~~ Methods for Function HourPmc in Package RISmed ~~
HourPpublish-methods ~~ Methods for Function HourPpublish in Package RISmed ~~
HourPpublish Extracts HourPpublish from Medline object.
ISSN-methods ~~ Methods for Function ISSN in Package RISmed ~~
ISSN Extracts ISSN from Medline object.
GrantID-methods ~~ Methods for Function GrantID in Package RISmed ~~
GrantID Extracts GrantID from Medline object.
HourReceived-methods ~~ Methods for Function HourReceived in Package RISmed ~~
HourReceived Extracts HourReceived from Medline object.
EUtilsQuery Construct URL to make NCBI EUtils query
AbstractText-methods ~~ Methods for Function AbstractText in Package RISmed ~~
AbstractText Extracts AbstractText from Medline object.
ArticleTitle-methods ~~ Methods for Function ArticleTitle in Package RISmed ~~
ArticleTitle Extracts ArticleTitle from Medline object.
MedlineTA Extracts MedlineTA from Medline object.
Mesh-methods ~~ Methods for Function Mesh in Package RISmed ~~
MinutePpublish Extracts MinutePpublish from Medline object.
MinutePubmed-methods ~~ Methods for Function MinutePubmed in Package RISmed ~~
NlmUniqueID Extracts NlmUniqueID from Medline object.
PMID-methods ~~ Methods for Function PMID in Package RISmed ~~
PublicationType Extracts PublicationType from Medline object.
Query-methods ~~ Methods for Function Query in Package RISmed ~~
DayPpublish-methods ~~ Methods for Function DayPpublish in Package RISmed ~~
DayPpublish Extracts DayPpublish from Medline object.
DayReceived-methods ~~ Methods for Function DayReceived in Package RISmed ~~
DayReceived Extracts DayReceived from Medline object.
Medline-class Class "Medline"
MedlinePgn-methods ~~ Methods for Function MedlinePgn in Package RISmed ~~
MinutePubmed Extracts MinutePubmed from Medline object.
MinuteReceived-methods ~~ Methods for Function MinuteReceived in Package RISmed ~~
Title-methods ~~ Methods for Function Title in Package RISmed ~~
YearPmc-methods ~~ Methods for Function YearPmc in Package RISmed ~~
YearPmc Extracts YearPmc from Medline object.
YearReceived-methods ~~ Methods for Function YearReceived in Package RISmed ~~
YearReceived Extracts YearReceived from Medline object.
HourPmc Extracts HourPmc from Medline object.
ISOAbbreviation-methods ~~ Methods for Function ISOAbbreviation in Package RISmed ~~
ISOAbbreviation Extracts ISOAbbreviation from Medline object.
Language-methods ~~ Methods for Function Language in Package RISmed ~~
print-Medline Print method for Medline object
print-methods Print method for EUtilsSummary object
YearEpublish-methods ~~ Methods for Function YearEpublish in Package RISmed ~~
YearEpublish Extracts YearEpublish from Medline object.
YearPubmed-methods ~~ Methods for Function YearPubmed in Package RISmed ~~
YearPubmed Extracts YearPubmed from Medline object.
Title Extracts Title from Medline object.
c,Medline-method Concatenate Medline
QueryCount Count of record results for EUtilsQuery
Language Extracts Language from Medline object.
MinutePmc Extracts MinutePmc from Medline object.
MinutePpublish-methods ~~ Methods for Function MinutePpublish in Package RISmed ~~
MinuteReceived Extracts MinuteReceived from Medline object.
MonthAccepted-methods ~~ Methods for Function MonthAccepted in Package RISmed ~~
MonthPpublish Extracts MonthPpublish from Medline object.
MonthPubmed-methods ~~ Methods for Function MonthPubmed in Package RISmed ~~
RegistryNumber-methods ~~ Methods for Function RegistryNumber in Package RISmed ~~
RegistryNumber Extracts RegistryNumber from Medline object.
YearAccepted-methods ~~ Methods for Function YearAccepted in Package RISmed ~~
YearAccepted Extracts YearAccepted from Medline object.
QueryId Get ids from EUtilsQuery
myeloma Example of results from EUtilsGet
summary-methods Summary method for EUtilsSummary object
QueryTranslation Get the NCBI query translation from EUtilsQuery
ELocationID-methods ~~ Methods for Function ELocationID in Package RISmed ~~
ELocationID Extracts ELocationID from Medline object.
HourPubmed-methods ~~ Methods for Function HourPubmed in Package RISmed ~~
HourPubmed Extracts HourPubmed from Medline object.
HourAccepted-methods ~~ Methods for Function HourAccepted in Package RISmed ~~
HourAccepted Extracts HourAccepted from Medline object.
ISSNLinking-methods ~~ Methods for Function ISSNLinking in Package RISmed ~~
ISSNLinking Extracts ISSNLinking from Medline object.
MinuteEpublish Extracts MinuteEpublish from Medline object.
MinutePmc-methods ~~ Methods for Function MinutePmc in Package RISmed ~~
MonthAccepted Extracts MonthAccepted from Medline object.
MonthEpublish-methods ~~ Methods for Function MonthEpublish in Package RISmed ~~
Issue-methods ~~ Methods for Function Issue in Package RISmed ~~
Issue Extracts Issue from Medline object.
MinuteAccepted Extracts MinuteAccepted from Medline object.
MinuteEpublish-methods ~~ Methods for Function MinuteEpublish in Package RISmed ~~
MonthPubmed Extracts MonthPubmed from Medline object.
MonthReceived-methods ~~ Methods for Function MonthReceived in Package RISmed ~~
PublicationStatus Extracts PublicationStatus from Medline object.
PublicationType-methods ~~ Methods for Function PublicationType in Package RISmed ~~
Volume-methods ~~ Methods for Function Volume in Package RISmed ~~
Volume Extracts Volume from Medline object.
YearPpublish-methods ~~ Methods for Function YearPpublish in Package RISmed ~~
MonthEpublish Extracts MonthEpublish from Medline object.
MonthPmc-methods ~~ Methods for Function MonthPmc in Package RISmed ~~
MonthReceived Extracts MonthReceived from Medline object.
YearPpublish Extracts YearPpublish from Medline object.
show-Medline Show method for Medline object
show-methods Show method for EUtilsSummary object
NlmUniqueID-methods ~~ Methods for Function NlmUniqueID in Package RISmed ~~
Query Extract Query from Medline object.
RISmed-package Download content from NCBI databases.
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Type Package
Date 2017-6-5
License GPL (>= 2)
RoxygenNote 5.0.1
NeedsCompilation no
Packaged 2017-06-06 01:40:19 UTC; skovalchik
Repository CRAN
Date/Publication 2017-06-06 10:31:53 UTC
depends methods , R (>= 2.8.0)

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