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RISmed (version 2.1.7)

Download Content from NCBI Databases

Description

A set of tools to extract bibliographic content from the National Center for Biotechnology Information (NCBI) databases, including PubMed. The name RISmed is a portmanteau of RIS (for Research Information Systems, a common tag format for bibliographic data) and PubMed.

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Version

Install

install.packages('RISmed')

Monthly Downloads

1,624

Version

2.1.7

License

GPL (>= 2)

Maintainer

S A Kovalchik

Last Published

June 6th, 2017

Functions in RISmed (2.1.7)

Affiliation-methods

~~ Methods for Function Affiliation in Package RISmed ~~
Affiliation

Extracts Affiliation from Medline object.
Agency-methods

~~ Methods for Function Agency in Package RISmed ~~
Agency

Extracts Agency from Medline object.
DayPmc-methods

~~ Methods for Function DayPmc in Package RISmed ~~
DayPmc

Extracts DayPmc from Medline object.
Acronym-methods

~~ Methods for Function Acronym in Package RISmed ~~
Acronym

Extracts Acronym from Medline object.
CopyrightInformation-methods

~~ Methods for Function CopyrightInformation in Package RISmed ~~
CopyrightInformation

Extracts CopyrightInformation from Medline object.
DayAccepted-methods

~~ Methods for Function DayAccepted in Package RISmed ~~
DayAccepted

Extracts DayAccepted from Medline object.
DayPubmed-methods

~~ Methods for Function DayPubmed in Package RISmed ~~
DayPubmed

Extracts DayPubmed from Medline object.
HourEpublish-methods

~~ Methods for Function HourEpublish in Package RISmed ~~
HourEpublish

Extracts HourEpublish from Medline object.
MedlinePgn

Extracts MedlinePgn from Medline object.
MedlineTA-methods

~~ Methods for Function MedlineTA in Package RISmed ~~
Cited-methods

~~ Methods for Function Cited in Package RISmed ~~
Cited

Number of citations
DayEpublish-methods

~~ Methods for Function DayEpublish in Package RISmed ~~
DayEpublish

Extracts DayEpublish from Medline object.
Mesh

Extracts Mesh headings from Medline object.
MinuteAccepted-methods

~~ Methods for Function MinuteAccepted in Package RISmed ~~
MonthPmc

Extracts MonthPmc from Medline object.
MonthPpublish-methods

~~ Methods for Function MonthPpublish in Package RISmed ~~
PMID

Extracts PMID from Medline object.
PublicationStatus-methods

~~ Methods for Function PublicationStatus in Package RISmed ~~
RefSource-methods

~~ Methods for Function RefSource in Package RISmed ~~
RefSource

Extracts RefSource from Medline object.
CollectiveName-methods

~~ Methods for Function CollectiveName in Package RISmed ~~
CollectiveName

Extracts CollectiveName from Medline object.
EUtilsSummary-class

Class "EUtilsSummary"
EUtilsSummary

Get summary of NCBI EUtils query
ArticleId-methods

~~ Methods for Function ArticleId in Package RISmed ~~
ArticleId

Extracts ArticleId from Medline object.
Author-methods

~~ Methods for Function Author in Package RISmed ~~
Author

Extracts Author from Medline object.
Country-methods

~~ Methods for Function Country in Package RISmed ~~
Country

Extracts Country from Medline object.
EUtilsGet

Results of an NCBI EUtils query
HourPmc-methods

~~ Methods for Function HourPmc in Package RISmed ~~
HourPpublish-methods

~~ Methods for Function HourPpublish in Package RISmed ~~
HourPpublish

Extracts HourPpublish from Medline object.
ISSN-methods

~~ Methods for Function ISSN in Package RISmed ~~
ISSN

Extracts ISSN from Medline object.
GrantID-methods

~~ Methods for Function GrantID in Package RISmed ~~
GrantID

Extracts GrantID from Medline object.
HourReceived-methods

~~ Methods for Function HourReceived in Package RISmed ~~
HourReceived

Extracts HourReceived from Medline object.
EUtilsQuery

Construct URL to make NCBI EUtils query
AbstractText-methods

~~ Methods for Function AbstractText in Package RISmed ~~
AbstractText

Extracts AbstractText from Medline object.
ArticleTitle-methods

~~ Methods for Function ArticleTitle in Package RISmed ~~
ArticleTitle

Extracts ArticleTitle from Medline object.
MedlineTA

Extracts MedlineTA from Medline object.
Mesh-methods

~~ Methods for Function Mesh in Package RISmed ~~
MinutePpublish

Extracts MinutePpublish from Medline object.
MinutePubmed-methods

~~ Methods for Function MinutePubmed in Package RISmed ~~
NlmUniqueID

Extracts NlmUniqueID from Medline object.
PMID-methods

~~ Methods for Function PMID in Package RISmed ~~
PublicationType

Extracts PublicationType from Medline object.
Query-methods

~~ Methods for Function Query in Package RISmed ~~
DayPpublish-methods

~~ Methods for Function DayPpublish in Package RISmed ~~
DayPpublish

Extracts DayPpublish from Medline object.
DayReceived-methods

~~ Methods for Function DayReceived in Package RISmed ~~
DayReceived

Extracts DayReceived from Medline object.
Medline-class

Class "Medline"
MedlinePgn-methods

~~ Methods for Function MedlinePgn in Package RISmed ~~
MinutePubmed

Extracts MinutePubmed from Medline object.
MinuteReceived-methods

~~ Methods for Function MinuteReceived in Package RISmed ~~
Title-methods

~~ Methods for Function Title in Package RISmed ~~
YearPmc-methods

~~ Methods for Function YearPmc in Package RISmed ~~
YearPmc

Extracts YearPmc from Medline object.
YearReceived-methods

~~ Methods for Function YearReceived in Package RISmed ~~
YearReceived

Extracts YearReceived from Medline object.
HourPmc

Extracts HourPmc from Medline object.
ISOAbbreviation-methods

~~ Methods for Function ISOAbbreviation in Package RISmed ~~
ISOAbbreviation

Extracts ISOAbbreviation from Medline object.
Language-methods

~~ Methods for Function Language in Package RISmed ~~
print-Medline

Print method for Medline object
print-methods

Print method for EUtilsSummary object
YearEpublish-methods

~~ Methods for Function YearEpublish in Package RISmed ~~
YearEpublish

Extracts YearEpublish from Medline object.
YearPubmed-methods

~~ Methods for Function YearPubmed in Package RISmed ~~
YearPubmed

Extracts YearPubmed from Medline object.
Title

Extracts Title from Medline object.
c,Medline-method

Concatenate Medline
QueryCount

Count of record results for EUtilsQuery
Language

Extracts Language from Medline object.
MinutePmc

Extracts MinutePmc from Medline object.
MinutePpublish-methods

~~ Methods for Function MinutePpublish in Package RISmed ~~
MinuteReceived

Extracts MinuteReceived from Medline object.
MonthAccepted-methods

~~ Methods for Function MonthAccepted in Package RISmed ~~
MonthPpublish

Extracts MonthPpublish from Medline object.
MonthPubmed-methods

~~ Methods for Function MonthPubmed in Package RISmed ~~
RegistryNumber-methods

~~ Methods for Function RegistryNumber in Package RISmed ~~
RegistryNumber

Extracts RegistryNumber from Medline object.
YearAccepted-methods

~~ Methods for Function YearAccepted in Package RISmed ~~
YearAccepted

Extracts YearAccepted from Medline object.
QueryId

Get ids from EUtilsQuery
myeloma

Example of results from EUtilsGet
summary-methods

Summary method for EUtilsSummary object
QueryTranslation

Get the NCBI query translation from EUtilsQuery
ELocationID-methods

~~ Methods for Function ELocationID in Package RISmed ~~
ELocationID

Extracts ELocationID from Medline object.
HourPubmed-methods

~~ Methods for Function HourPubmed in Package RISmed ~~
HourPubmed

Extracts HourPubmed from Medline object.
HourAccepted-methods

~~ Methods for Function HourAccepted in Package RISmed ~~
HourAccepted

Extracts HourAccepted from Medline object.
ISSNLinking-methods

~~ Methods for Function ISSNLinking in Package RISmed ~~
ISSNLinking

Extracts ISSNLinking from Medline object.
MinuteEpublish

Extracts MinuteEpublish from Medline object.
MinutePmc-methods

~~ Methods for Function MinutePmc in Package RISmed ~~
MonthAccepted

Extracts MonthAccepted from Medline object.
MonthEpublish-methods

~~ Methods for Function MonthEpublish in Package RISmed ~~
Issue-methods

~~ Methods for Function Issue in Package RISmed ~~
Issue

Extracts Issue from Medline object.
MinuteAccepted

Extracts MinuteAccepted from Medline object.
MinuteEpublish-methods

~~ Methods for Function MinuteEpublish in Package RISmed ~~
MonthPubmed

Extracts MonthPubmed from Medline object.
MonthReceived-methods

~~ Methods for Function MonthReceived in Package RISmed ~~
PublicationStatus

Extracts PublicationStatus from Medline object.
PublicationType-methods

~~ Methods for Function PublicationType in Package RISmed ~~
Volume-methods

~~ Methods for Function Volume in Package RISmed ~~
Volume

Extracts Volume from Medline object.
YearPpublish-methods

~~ Methods for Function YearPpublish in Package RISmed ~~
MonthEpublish

Extracts MonthEpublish from Medline object.
MonthPmc-methods

~~ Methods for Function MonthPmc in Package RISmed ~~
MonthReceived

Extracts MonthReceived from Medline object.
YearPpublish

Extracts YearPpublish from Medline object.
show-Medline

Show method for Medline object
show-methods

Show method for EUtilsSummary object
NlmUniqueID-methods

~~ Methods for Function NlmUniqueID in Package RISmed ~~
Query

Extract Query from Medline object.
RISmed-package

Download content from NCBI databases.