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RISmed (version 2.2)

Download Content from NCBI Databases

Description

A set of tools to extract bibliographic content from the National Center for Biotechnology Information (NCBI) databases, including PubMed. The name RISmed is a portmanteau of RIS (for Research Information Systems, a common tag format for bibliographic data) and PubMed.

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Version

Install

install.packages('RISmed')

Monthly Downloads

636

Version

2.2

License

GPL (>= 2)

Maintainer

S A Kovalchik

Last Published

October 29th, 2020

Functions in RISmed (2.2)

AbstractText-methods

~~ Methods for Function AbstractText in Package RISmed ~~
ArticleId

Extracts ArticleId from Medline object.
AbstractText

Extracts AbstractText from Medline object.
Agency

Extracts Agency from Medline object.
Affiliation

Extracts Affiliation from Medline object.
ArticleId-methods

~~ Methods for Function ArticleId in Package RISmed ~~
COIStatement-methods

~~ Methods for Function COIStatement in Package RISmed ~~
Acronym-methods

~~ Methods for Function Acronym in Package RISmed ~~
Affiliation-methods

~~ Methods for Function Affiliation in Package RISmed ~~
Agency-methods

~~ Methods for Function Agency in Package RISmed ~~
DayEntrez-methods

~~ Methods for Function DayEntrez in Package RISmed ~~
COIStatement

Extracts COIStatement from Medline object.
DayEntrez

Extracts DayEntrez from Medline object.
Cited

Number of citations
Cited-methods

~~ Methods for Function Cited in Package RISmed ~~
Author

Extracts Author from Medline object.
Acronym

Extracts Acronym from Medline object.
ArticleTitle-methods

~~ Methods for Function ArticleTitle in Package RISmed ~~
DayArticleDate-methods

~~ Methods for Function DayArticleDate in Package RISmed ~~
Author-methods

~~ Methods for Function Author in Package RISmed ~~
CollectiveName-methods

~~ Methods for Function CollectiveName in Package RISmed ~~
Country-methods

~~ Methods for Function Country in Package RISmed ~~
CollectiveName

Extracts CollectiveName from Medline object.
DOI

Extracts DOI from Medline object.
DOI-methods

~~ Methods for Function DOI in Package RISmed ~~
ArticleTitle

Extracts ArticleTitle from Medline object.
DayArticleDate

Extracts DayArticleDate from Medline object.
DayPmc

Extracts DayPmc from Medline object.
DayAccepted

Extracts DayAccepted from Medline object.
DayPmc-methods

~~ Methods for Function DayPmc in Package RISmed ~~
DayPubmed-methods

~~ Methods for Function DayPubmed in Package RISmed ~~
DayAccepted-methods

~~ Methods for Function DayAccepted in Package RISmed ~~
CopyrightInformation-methods

~~ Methods for Function CopyrightInformation in Package RISmed ~~
CopyrightInformation

Extracts CopyrightInformation from Medline object.
DayReceived

Extracts DayReceived from Medline object.
EUtilsSummary-class

Class "EUtilsSummary"
Country

Extracts Country from Medline object.
DayReceived-methods

~~ Methods for Function DayReceived in Package RISmed ~~
DayEpublish-methods

~~ Methods for Function DayEpublish in Package RISmed ~~
DayPubmed

Extracts DayPubmed from Medline object.
HourAccepted

Extracts HourAccepted from Medline object.
DayEpublish

Extracts DayEpublish from Medline object.
EUtilsSummary

Get summary of NCBI EUtils query
HourAccepted-methods

~~ Methods for Function HourAccepted in Package RISmed ~~
DayPubDate-methods

~~ Methods for Function DayPubDate in Package RISmed ~~
DayPubDate

Extracts DayPubDate from Medline object.
ELocationID

Extracts ELocationID from Medline object.
DayMedline-methods

~~ Methods for Function DayMedline in Package RISmed ~~
DayMedline

Extracts DayMedline from Medline object.
ELocationID-methods

~~ Methods for Function ELocationID in Package RISmed ~~
GrantID-methods

~~ Methods for Function GrantID in Package RISmed ~~
HourEntrez-methods

~~ Methods for Function HourEntrez in Package RISmed ~~
ISSN-methods

~~ Methods for Function ISSN in Package RISmed ~~
ISSN

Extracts ISSN from Medline object.
HourMedline

Extracts HourMedline from Medline object.
ISOAbbreviation

Extracts ISOAbbreviation from Medline object.
HourMedline-methods

~~ Methods for Function HourMedline in Package RISmed ~~
GrantID

Extracts GrantID from Medline object.
ISOAbbreviation-methods

~~ Methods for Function ISOAbbreviation in Package RISmed ~~
MinuteEpublish

Extracts MinuteEpublish from Medline object.
HourEntrez

Extracts HourEntrez from Medline object.
HourPmc-methods

~~ Methods for Function HourPmc in Package RISmed ~~
Medline-class

Class "Medline"
MedlinePgn-methods

~~ Methods for Function MedlinePgn in Package RISmed ~~
DayPpublish

Extracts DayPpublish from Medline object.
HourPpublish

Extracts HourPpublish from Medline object.
HourPpublish-methods

~~ Methods for Function HourPpublish in Package RISmed ~~
DayPpublish-methods

~~ Methods for Function DayPpublish in Package RISmed ~~
MinuteMedline-methods

~~ Methods for Function MinuteMedline in Package RISmed ~~
HourReceived-methods

~~ Methods for Function HourReceived in Package RISmed ~~
HourPmc

Extracts HourPmc from Medline object.
MedlinePgn

Extracts MedlinePgn from Medline object.
MonthAccepted

Extracts MonthAccepted from Medline object.
HourReceived

Extracts HourReceived from Medline object.
MedlineTA-methods

~~ Methods for Function MedlineTA in Package RISmed ~~
MonthArticleDate-methods

~~ Methods for Function MonthArticleDate in Package RISmed ~~
HourPubmed-methods

~~ Methods for Function HourPubmed in Package RISmed ~~
DayRevised

Extracts DayRevised from Medline object.
NlmUniqueID

Extracts NlmUniqueID from Medline object.
DayRevised-methods

~~ Methods for Function DayRevised in Package RISmed ~~
MinutePubmed

Extracts MinutePubmed from Medline object.
EUtilsGet

Results of an NCBI EUtils query
PMID

Extracts PMID from Medline object.
PMID-methods

~~ Methods for Function PMID in Package RISmed ~~
MedlineTA

Extracts MedlineTA from Medline object.
ISSNLinking-methods

~~ Methods for Function ISSNLinking in Package RISmed ~~
HourPubmed

Extracts HourPubmed from Medline object.
ISSNLinking

Extracts ISSNLinking from Medline object.
MinuteEntrez

Extracts MinuteEntrez from Medline object.
MinuteReceived

Extracts MinuteReceived from Medline object.
MinuteEpublish-methods

~~ Methods for Function MinuteEpublish in Package RISmed ~~
MonthAccepted-methods

~~ Methods for Function MonthAccepted in Package RISmed ~~
EUtilsQuery

Construct URL to make NCBI EUtils query
MonthMedline

Extracts MonthMedline from Medline object.
Mesh-methods

~~ Methods for Function Mesh in Package RISmed ~~
MinuteReceived-methods

~~ Methods for Function MinuteReceived in Package RISmed ~~
MinuteMedline

Extracts MinuteMedline from Medline object.
HourEpublish-methods

~~ Methods for Function HourEpublish in Package RISmed ~~
MinutePmc-methods

~~ Methods for Function MinutePmc in Package RISmed ~~
MonthPmc-methods

~~ Methods for Function MonthPmc in Package RISmed ~~
PublicationStatus-methods

~~ Methods for Function PublicationStatus in Package RISmed ~~
YearAccepted-methods

~~ Methods for Function YearAccepted in Package RISmed ~~
Mesh

Extracts Mesh headings from Medline object.
MonthPmc

Extracts MonthPmc from Medline object.
MonthPpublish-methods

~~ Methods for Function MonthPpublish in Package RISmed ~~
YearAccepted

Extracts YearAccepted from Medline object.
HourEpublish

Extracts HourEpublish from Medline object.
Issue-methods

~~ Methods for Function Issue in Package RISmed ~~
YearEntrez-methods

~~ Methods for Function YearEntrez in Package RISmed ~~
Issue

Extracts Issue from Medline object.
MonthEpublish

Extracts MonthEpublish from Medline object.
YearEntrez

Extracts YearEntrez from Medline object.
YearPubDate

Extracts YearPubDate from Medline object.
YearPubDate-methods

~~ Methods for Function YearPubDate in Package RISmed ~~
QueryId

Get ids from EUtilsQuery
MinuteAccepted-methods

~~ Methods for Function MinuteAccepted in Package RISmed ~~
MonthReceived

Extracts MonthReceived from Medline object.
MonthRevised-methods

~~ Methods for Function MonthRevised in Package RISmed ~~
myeloma

Example of results from EUtilsGet
MonthRevised

Extracts MonthRevised from Medline object.
MonthMedline-methods

~~ Methods for Function MonthMedline in Package RISmed ~~
MonthPubDate

Extracts MonthPubDate from Medline object.
MinutePmc

Extracts MinutePmc from Medline object.
MinutePpublish

Extracts MinutePpublish from Medline object.
MinutePpublish-methods

~~ Methods for Function MinutePpublish in Package RISmed ~~
MonthPubmed-methods

~~ Methods for Function MonthPubmed in Package RISmed ~~
NlmUniqueID-methods

~~ Methods for Function NlmUniqueID in Package RISmed ~~
MinutePubmed-methods

~~ Methods for Function MinutePubmed in Package RISmed ~~
RefSource-methods

~~ Methods for Function RefSource in Package RISmed ~~
MinuteAccepted

Extracts MinuteAccepted from Medline object.
Language

Extracts Language from Medline object.
Language-methods

~~ Methods for Function Language in Package RISmed ~~
RefSource

Extracts RefSource from Medline object.
RISmed-package

Download content from NCBI databases.
Query

Extract Query from Medline object.
Volume-methods

~~ Methods for Function Volume in Package RISmed ~~
PublicationStatus

Extracts PublicationStatus from Medline object.
Title

Extracts Title from Medline object.
MonthEntrez

Extracts MonthEntrez from Medline object.
MonthEpublish-methods

~~ Methods for Function MonthEpublish in Package RISmed ~~
Title-methods

~~ Methods for Function Title in Package RISmed ~~
Volume

Extracts Volume from Medline object.
PublicationType-methods

~~ Methods for Function PublicationType in Package RISmed ~~
YearPmc

Extracts YearPmc from Medline object.
RegistryNumber-methods

~~ Methods for Function RegistryNumber in Package RISmed ~~
YearPmc-methods

~~ Methods for Function YearPmc in Package RISmed ~~
YearMedline

Extracts YearMedline from Medline object.
YearMedline-methods

~~ Methods for Function YearMedline in Package RISmed ~~
RegistryNumber

Extracts RegistryNumber from Medline object.
MinuteEntrez-methods

~~ Methods for Function MinuteEntrez in Package RISmed ~~
YearReceived

Extracts YearReceived from Medline object.
YearReceived-methods

~~ Methods for Function YearReceived in Package RISmed ~~
YearRevised

Extracts YearRevised from Medline object.
YearRevised-methods

~~ Methods for Function YearRevised in Package RISmed ~~
YearArticleDate-methods

~~ Methods for Function YearArticleDate in Package RISmed ~~
print-Medline

Print method for Medline object
MonthArticleDate

Extracts MonthArticleDate from Medline object.
YearEpublish-methods

~~ Methods for Function YearEpublish in Package RISmed ~~
print-methods

Print method for EUtilsSummary object
YearEpublish

Extracts YearEpublish from Medline object.
MonthEntrez-methods

~~ Methods for Function MonthEntrez in Package RISmed ~~
YearArticleDate

Extracts YearArticleDate from Medline object.
YearPpublish-methods

~~ Methods for Function YearPpublish in Package RISmed ~~
MonthPpublish

Extracts MonthPpublish from Medline object.
MonthPubDate-methods

~~ Methods for Function MonthPubDate in Package RISmed ~~
MonthPubmed

Extracts MonthPubmed from Medline object.
MonthReceived-methods

~~ Methods for Function MonthReceived in Package RISmed ~~
YearPpublish

Extracts YearPpublish from Medline object.
PublicationType

Extracts PublicationType from Medline object.
YearPubmed-methods

~~ Methods for Function YearPubmed in Package RISmed ~~
Query-methods

~~ Methods for Function Query in Package RISmed ~~
YearPubmed

Extracts YearPubmed from Medline object.
c,Medline-method

Concatenate Medline
QueryCount

Count of record results for EUtilsQuery
show-Medline

Show method for Medline object
QueryTranslation

Get the NCBI query translation from EUtilsQuery
summary-methods

Summary method for EUtilsSummary object
show-methods

Show method for EUtilsSummary object