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RImmPort (version 1.0.2)

RImmPort: Enabling Ready-for-analysis Immunology Research Data

Description

The RImmPort package simplifies access to ImmPort data for analysis in the R environment. It provides a standards-based interface to the ImmPort study data that is in a proprietary format.

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Version

Version

1.0.2

License

GPL-3

Maintainer

Ravi Shankar

Last Published

February 15th, 2017

Functions in RImmPort (1.0.2)

Demographics Domain

Demographics Domain
Concomitant Medications Domain

Concomitant Medications Domain
buildNewSqliteDb

buildNewSqliteDb
Associated Persons Medical History Domain

Associated Persons Medical History Domain
Adverse Events Domain

Adverse Events Domain
AE

Adverse Events Domain Variables
Cellular Quantification Domain

Cellular Quantification Domain
CM

Concomitant Medications Domain Variables
APMH

Associated Persons Medical History Domain Variables
DM

Demographics Domain Variables
getAssayDataOfStudies

Get specific assay data of one or more studies from the ImmPort database
EX

Exposure Domain Variables
FA

Findings About Domain Variables
Findings-class

Findings class
getDomainCode

Get code of a specific domain
Genetics Findings Domain

Genetics Findings Domain
Findings About Domain

Findings About Domain
Exposure Domain

Exposure Domain
DV

Protocol Deviations Domain Variables
Events-class

Events class
loadSerializedStudyData

Load the Serialized Data of a Study
QS

Questionnaires Domain Variables
getListOfDomains

Get names of all domains and their codes
Medical History Domain

Medical History Domain
SUPP

Supplemental Variables
Questionnaires Domain

Questionnaires Domain
SUPPDV

Protocol Deviations Domain Supplemental Variables
SUPPZA

Protein Quantification Domain Supplemental Variables
getListOfStudies

Get a list of all studies
SUPPZB

Cellular Quantification Domain Supplemental Variables
mergeDomainAndSupplemental

Merge the Domain dataframe and Supplemental dataframe (long form)
getStudiesWithSpecificAssayData

Get a list of studies that have specific assay type data
RImmPort

RImmPort: Enabling ready-for-analysis immunology research data
getStudiesWithSpecificDomainData

Get a list of studies that have specific domain data
MH

Medical History Domain Variables
getListOfAssayTypes

Get a list of Assay Types
getDomainDataOfStudies

Get specific domain data of one or more studies from the ImmPort database
serialzeStudyData

Serialize the Study Data
Physical Examination Domain

Physical Examination Domain
PF

Genetics Findings Domain Variables
SUPPPF

Genetics Findings Domain Supplemental Variables
Study-class

Study class
LB

Laboratory Test Results Domain Variables
Laboratory Test Results Domain

Laboratory Test Results Domain
SU

Substance Use Domain Variables
setImmPortDataSource

Set ImmPort data ource
Skin Response Domain

Skin Response Domain
SUPPFA

Findings About Domain Supplemental Variables
SUPPLB

Laboratory Test Results Domain Supplemental Variables
Trial Arms Domain

Trial Arms Domain
TI

Trial Inclusion Exclusion Criteria Domain Variables
Substance Use Domain

Substance Use Domain
Subject Visits Domain

Subject Visits Domain
Vital Signs Domain

Vital Signs Domain
TS

Trial Summary Domain Variables
Titer Assay Results Domain

Titer Assay Results Domain
SUPPVS

Vital Signs Domain Supplemental Variables
Trial Inclusion Exclusion Criteria Domain

Trial Inclusion Exclusion Criteria Domain
TrialDesign-class

Trial Design class
Trial Summary Domain

Trial Summary Domain
Interventions-class

Interventions class
SUPPZC

Nucleic Acid Quantification Domain Supplemental Variables
SUPPZD

Titer Assay Results Domain Supplemental Variables
getStudy

Get all data of a specific study from the ImmPort data source
Protein Quantification Domain

Protein Quantification Domain
Nucleic Acid Quantification Domain

Nucleic Acid Quantification Domain
ZD

Titer Assay Results Domain Variables
Protocol Deviations Domain

Protocol Deviations Domain
PE

Physical Examination Domain Variables
SpecialPurpose-class

Special Purpose class
SR

Skin Response Domain Variables
SV

Subject Visits Domain Variables
TA

Trial Arms Domain Variables
SUPPPE

Physical Examination Domain Supplemental Variables
SUPPMH

Medical History Domain Supplemental Variables
ZB

Cellular Quantification Domain Variables
ZA

Protein Quantification Domain Variables
VS

Vital Signs Domain Variables
ZC

Nucleic Acid Quantification Domain Variables