RNASeqGenie (version 1.0.44)

buildAlignerParams: Build Aligner Command-Line Args

Description

Constructs a string of aligner command-line argts given an options object from HTSeqGenieBase

Usage

buildAlignerParams(options, genome_files, max_mismatches)

Arguments

options

An HTSeqGenieBase::PipelineOptions object

genome_files

A list of genome files as created by HTSeqGenieBase

max_mismatches

Maximum number of mismatches allowed per read

Value

• string