buildCountsGRangesLists: Build GRanges for Counts and RPKM
Description
Create the GRanges of genomic coordinates to count overlaps with hits
Usage
buildCountsGRangesLists(genome, save_dir)
Arguments
genome
'hg19' or 'mm9'
save_dir
directory to save RData file in
Value
0
Details
Using GenomicFeatures, downloads RefSeq and extracts genes, cds,
exons, transcripts, and intergenic regions. Then calculates number
of nucleotides for each.