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RNASeqGenie (version 1.0.44)

getUnpairedMult: Extract Parts of Paired-End Alignment Data That Map Qniquely

Description

Extract the parts of paired-end alignment data that map uniquely

Usage

getUnpairedMult(bam_file, parallelize=FALSE)

Arguments

bam_file
The input bam file
parallelize
Whether to use parallelization or not

Value

  • a GappedAlignments of the uniquely mapping components of the input bam file

Details

In some BAM files of paired-end data, one end of the read may map uniquely while the other end maps multiple times. This function extracts the components of a read that map uniquely.