mergeLanes: Merge *Genie Pipeline Output Data
Description
Merges data from different lanes of the same technology type in *Genie next-gen seq pipeline ouputUsage
mergeLanes(dirs_to_merge, sample_id, merged_dir, species="human",
write_manifest=FALSE, seq_type=c("exome-seq", "rna-seq"))Arguments
dirs_to_merge
The set of directory of pipeline output to merge
sample_id
The sample ID of the data being merged
merged_dir
The destination directory of the merged data
write_manifest
Whether to write a MANIFEST file of expected output from the merge operation
seq_type
"rna-seq" or "exome-seq"
Details
When the *Genie pipeline is run, a standardized set of output
files are created. Often, it is helpful to combine data from
different sequencing runs performed on the same biological
sample. This function will perform the merge.