RNASeqGenie (version 1.0.44)

readRNASeqEnds: Read Paired End Bam Files

Description

Read paired end BAM files with requested columns from the BAM

Usage

readRNASeqEnds(bam_file, scan_bam_what)

Arguments

bam_file

scan_bam_what

Value

• GRangesList

Details

This function returns a GRangesList containing information about pair-end alignment data. It is essentially Rsamtools::readBamGappedAlignments, but it uses Rsamtools::scanBam to get information not that cannot be obtained from readBamGappedAlignments