RNAither (version 2.20.0)

compareReplicaPlates: Compare replica plates

Description

Generates plots comparing the same plates in different experiments pairwise.

Usage

compareReplicaPlates(header, dataset, plotTitle, col4val, showPlot)

Arguments

header

the header of a dataset file generated with generateDatasetFile

dataset

an R data frame generated with generateDatasetFile

plotTitle

the plot title

col4val

a character string specifying the column whose values will be used for the plot

showPlot

0 or 1. 1 will open one or several plot windows in the R GUI, 0 will only save the plot(s) without opening windows

Value

For each plate, plots of pairwise comparisons between replicate intensities are generated and saved as a pdf file named after the experiment name specified in the header concatenated with the plotTitle .

See Also

compareReplicates

Examples

data(exampleHeader, package="RNAither")
data(exampleDataset, package="RNAither")

compareReplicaPlates(header, dataset, "Comparison of replica plate", "SigIntensity", 1)