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RNAseqQC (version 0.2.1)

filter_genes: Filter genes with low counts

Description

Filter genes with low counts

Usage

filter_genes(dds, min_count = 5, min_rep = 3)

Value

A DESeq2::DESeqDataSet object with only those genes that meet the filter criteria.

Arguments

dds

A DESeqDataSet

min_count, min_rep

keep genes with at least min_count counts in at least min_rep replicates

Examples

Run this code
library("DESeq2")
dds <- makeExampleDESeqDataSet()
filter_genes(dds)

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