RNAseqQC (version 0.2.1)

plot_gene_detection: Plot number of detected genes for each sample

Description

For specified thresholds, the number of detected genes is shown for each sample.

Usage

plot_gene_detection(dds, thresholds = c(3, 10, 20, 50))

Value

A ggplot object of the ggplot2 package that contains the gene detection plot.

Arguments

dds

A DESeqDataSet

thresholds

Vector of thresholds for which the number of genes with counts greater or equal than the thresholds is plotted

Examples

library("DESeq2")
set.seed(1)
dds <- makeExampleDESeqDataSet()
plot_gene_detection(dds)