RNAsmc (version 0.6.0)

RNAcirPlot: function for plotting RNA secondary structure in a circos style

Description

Given a RNA secondary structure,it plots RNA secondary structure in a circos style

Usage

RNAcirPlot(ctFile,cex = 1,posNum = 2.5,ifNum = FALSE,
            ifBulge = FALSE,ifExternalLoops = FALSE,ifHairpin = FALSE,
            ifInternalLoops = FALSE,ifMultiBranchLoops = FALSE)

Arguments

ctFile

A RNA secondary structure file containing structure information

cex

The size of base or number in plotting

posNum

The position of number in plotting. Change the position of number if number is plotted

ifNum

Whether to draw number

ifBulge

Whether to emphasize bulge loops

ifExternalLoops

Whether to emphasize external loops

ifHairpin

Whether to emphasize hairpin loops

ifInternalLoops

Whether to emphasize internal loops

ifMultiBranchLoops

Whether to emphasize multi branch loops

Value

Return a RNA secondary structure in a circos style

Examples

# NOT RUN {
##########
data(DataRNAstr)
RNAcirPlot(DataRNAstr)
# }