RNAsmc (version 0.6.0)

getScore: Internal function for getting similarity score in a RNA secondary structure

Description

Internal function for getting similarity score in a RNA secondary structure

Usage

getScore(h1,i1,b1,m1,s1,e1,
         seqA,seqCode1,h1Num,i1Num,b1Num,m1Num,s1Num,e1Num,
         h2,i2,b2,m2,s2,e2,
         seqB,seqCode2,h2Num,i2Num,b2Num,m2Num,s2Num,e2Num)

Arguments

h1

hairpin_loop result A

i1

internal_loop result A

b1

bulge_loop result A

m1

multi_branch_loop result A

s1

stem result A

e1

external_loop result A

seqA

sequence A

seqCode1

coding sequence A

h1Num

hairpin_loop number A

i1Num

internal_loop number A

b1Num

bulge_loop number A

m1Num

multi_branch_loop number A

s1Num

stem number A

e1Num

external_loop number A

h2

hairpin_loop result B

i2

internal_loop result B

b2

bulge_loop result B

m2

multi_branch_loop result B

s2

stem result B

e2

external_loop result B

seqB

sequence B

seqCode2

coding sequence B

h2Num

hairpin_loop number B

i2Num

internal_loop number B

b2Num

bulge_loop number B

m2Num

multi_branch_loop number B

s2Num

stem number B

e2Num

external_loop number B

Value

Return a list countains similarity score and other information

Examples

# NOT RUN {
##########
#nothing
# }