return similarity score of two RNA secondary structures
Usage
strCompare(ctFile1,ctFile2,randomTime = 1000)
Arguments
ctFile1
A RNA secondary structure file containing structure information
ctFile2
A RNA secondary structure file containing structure information
randomTime
random times of permutation test to get P value
Value
Returns a numerical value which represent the similarity of the two RNA secondary structures.The larger the value, the more similar the two RNA structures are.The maximum value is 10, representing the two RNA secondary structures exactly the same,and 0 is the minmum value.
# NOT RUN {###data(DataCluster1)
data(DataCluster2)
#####RNAstrPlot(DataCluster1)#####RNAstrPlot(DataCluster2)strCompare(DataCluster1,DataCluster2,randomTime = 100)
# }