Internal function for getting similarity score in a RNA secondary structure
getScore(h1,i1,b1,m1,s1,e1,
seqA,seqCode1,h1Num,i1Num,b1Num,m1Num,s1Num,e1Num,
h2,i2,b2,m2,s2,e2,
seqB,seqCode2,h2Num,i2Num,b2Num,m2Num,s2Num,e2Num)Return a list countains similarity score and other information
hairpin_loop result A
internal_loop result A
bulge_loop result A
multi_branch_loop result A
stem result A
external_loop result A
sequence A
coding sequence A
hairpin_loop number A
internal_loop number A
bulge_loop number A
multi_branch_loop number A
stem number A
external_loop number A
hairpin_loop result B
internal_loop result B
bulge_loop result B
multi_branch_loop result B
stem result B
external_loop result B
sequence B
coding sequence B
hairpin_loop number B
internal_loop number B
bulge_loop number B
multi_branch_loop number B
stem number B
external_loop number B
Zheng Hewei