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RNOmni (version 0.1.4)

Omnibus Test for Genetic Association Analysis using the Rank Normal Transformation

Description

Implementation of genetic association tests that utilize the rank based inverse normal transformation (INT). The primary contribution is an omnibus test, which synthesizes two INT-based approaches, termed direct INT (DINT) and partially indirect INT (PIINT). In genome scale simulations, the omnibus test routinely provided valid inference against continuous phenotypes with skewed and heavy tailed residual distributions. Association testing against these same phenotypes via standard linear regression led to an excess of false positive associations. In addition to controlling the type I error, the omnibus approach provided power comparable to the more powerful of the component methods.

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Version

Install

install.packages('RNOmni')

Monthly Downloads

805

Version

0.1.4

License

GPL-2

Maintainer

Zachary McCaw

Last Published

November 16th, 2017

Functions in RNOmni (0.1.4)

inCheck

Input Check
S

Population Structure Adjustments
AvgCorr

Average Correlation Estimate.
missFilter

Missingness Filter
BAT

Basic Association Test
X

Simulated Covariates
FIINT

Fully Indirect-INT
Y

Simulated Phenotypes
G

Simulated Genotypes
rankNormal

Rank-Normalize
Omni

Omnibus P-value
PIINT

Partially Indirect-INT
BootCorr

Bootstrap Correlation Estimate.
DINT

Direct-INT
RNOmni

Rank-Normal Omnibus Test