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RNOmni (version 0.2.0)

Omnibus Test for Genetic Association Analysis using the Rank Normal Transformation

Description

Implementation of genetic association tests that utilize the rank based inverse normal transformation (INT). The primary contribution is an omnibus test, which synthesizes two complementary INT-based approaches. In simulations against phenotypes with skewed and heavy tailed residual distributions, the omnibus test provided valid inference in the absence of a genotypic effect, and provided power comparable to the more powerful of the component methods in the presence of a genotypic effect. Under these settings, standard linear regression often failed to control the type I error.

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Version

Install

install.packages('RNOmni')

Monthly Downloads

585

Version

0.2.0

License

GPL-3

Maintainer

Zachary McCaw

Last Published

April 1st, 2018

Functions in RNOmni (0.2.0)

IINT

Indirect-INT
Y

Simulated Phenotypes
BootCorr

Bootstrap Correlation Estimate.
OmniP

Omnibus P-value
FIINT

Fully Indirect-INT
BAT

Basic Association Test
G

Simulated Genotypes
S

Population Structure Adjustments
AvgCorr

Average Correlation Estimate.
DINT

Direct-INT
RNOmni

Rank-Normal Omnibus Test
dotP

Dot Product
eps

Residuals
scoreStat

Score Statistic
errProj

Error Projection
X

Simulated Covariates
inCheck

Input Check
rankNormal

Rank-Normalize
scaleParam

Scale Parameter