RNeXML (version 2.2.0)

taxize_nexml: taxize nexml

Description

Check taxonomic names against the specified service and add appropriate semantic metadata to the nexml OTU unit containing the corresponding identifier.

Usage

taxize_nexml(nexml, type = c("NCBI"), ...)

Arguments

nexml

a nexml object

type

the name of the identifier to use

...

additional arguments (not implemented yet)

Examples

# NOT RUN {
data(bird.orders)
birds <- add_trees(bird.orders)
birds <- taxize_nexml(birds, "NCBI")
# }