get_characters_list

Provides access to phyloinformatic data in 'NeXML' format.  The
package should add new functionality to R such as the possibility to
manipulate 'NeXML' objects in more various and refined way and compatibility
with 'ape' objects.

Carl Boettiger

RNeXML

Semantically Rich I/O for the 'NeXML' Format

Scott Chamberlain

Hilmar Lapp

Kseniia Shumelchyk

Rutger Vos

get_characters_list function

<dl><dt>nexml</dt>
<dd>nexml object (e.g. from read.nexml)</dd>
<dt>rownames_as_col</dt>
<dd>option to return character matrix rownames
(with taxon ids) as it's own column in the data.frame. Default is FALSE
for compatibility with geiger and similar packages.</dd></dl>

Arguments

Extract the character matrix — get_characters_list

<dl>

<dt>nexml</dt>
<dd>nexml object (e.g. from read.nexml)</dd>


<dt>rownames_as_col</dt>
<dd>option to return character matrix rownames
(with taxon ids) as it's own column in the data.frame. Default is FALSE
for compatibility with geiger and similar packages.</dd>

</dl>

Extract the character matrix

get_characters_list: Extract the character matrix

Description

Usage

Value

Arguments

Examples