toPhylo

Provides access to phyloinformatic data in 'NeXML' format.  The
package should add new functionality to R such as the possibility to
manipulate 'NeXML' objects in more various and refined way and compatibility
with 'ape' objects.

Carl Boettiger

RNeXML

Semantically Rich I/O for the 'NeXML' Format

Scott Chamberlain

Hilmar Lapp

Kseniia Shumelchyk

Rutger Vos

toPhylo function

<dl><dt>tree</dt>
<dd>an nexml tree element</dd>
<dt>otus</dt>
<dd>a character string of taxonomic labels, named by the otu ids.
e.g. (from get_otu_maps for the otus set matching the relevant trees node.</dd></dl>

Arguments

nexml to phylo — toPhylo

<dl>

<dt>tree</dt>
<dd>an nexml tree element</dd>


<dt>otus</dt>
<dd>a character string of taxonomic labels, named by the otu ids.
e.g. (from get_otu_maps for the otus set matching the relevant trees node.</dd>

</dl>

nexml to phylo

toPhylo: nexml to phylo

Description

Usage

Value

Arguments