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ROKET (version 1.0.0)

Optimal Transport-Based Kernel Regression

Description

Perform optimal transport on somatic point mutations and kernel regression hypothesis testing by integrating pathway level similarities at the gene level (Little et al. (2023) ). The software implements balanced and unbalanced optimal transport and omnibus tests with 'C++' across a set of tumor samples and allows for multi-threading to decrease computational runtime.

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Version

Install

install.packages('ROKET')

Monthly Downloads

144

Version

1.0.0

License

GPL (>= 3)

Maintainer

Paul Little

Last Published

March 6th, 2025

Functions in ROKET (1.0.0)

kOT_sim_REG

kOT_sim_REG
run_myOTs

run_myOTs
kOT_sim_AGG

kOT_sim_AGG
kOT_sim_OT

kOT_sim_OT
run_myOT

run_myOT
kOT_sim_make

kOT_sim_make
kernTEST

kernTEST