ROTS (version 1.0.0)

plot.ROTS: Plotting of a ROTS object

Description

Plots the ROTS objects created with the ROTS package.

Usage

"plot"(x, fdr=0.05, type="volcano", ...)

Arguments

x

A ROTS object created from differential expression testing run by ROTS.

fdr

Selected cutoff for FDR value.

type

Type of plot to be created. Options are volcano (default) and heatmap.

...

Other arguments passed to the plot function.

Value

Plots the results from ROTS object.

Details

This function plots the results from a ROTS object using given false discovery rate threshold.

See Also

affySpikeIn

Examples

  ## ROTS-statistic for the Affymetrix spike-in data. 
  rots.out <- ROTS(data = affySpikeIn, groups = c(rep(0,5), rep(1,5)),
      B = 100, K = 500 , seed = 1234)
  ## Plotting of the ROTS results.
  plot(rots.out)