peRes-class


This class is used to encode the results of the pathway analysis performed by the function <code><a rd-options="" href="/link/pe?package=ROntoTools&version=2.0.0" data-mini-rdoc="ROntoTools::pe">pe</a></code>.


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ROntoTools

R Onto-Tools suite

peRes-class function

 <dl>
    <dt><code>pathways</code>:</dt><dd>A list of <code><a rd-options="" href="/link/pePathway-class?package=ROntoTools&version=2.0.0" data-mini-rdoc="ROntoTools::pePathway-class">pePathway-class</a></code> objects.</dd> <dt><code>input</code>:</dt><dd>named vector of fold changes used for the analysis. The names of the vector are the IDs originaly used.</dd> <dt><code>ref</code>:</dt><dd>character vector containing the IDs used as reference in the analysis.</dd> <dt><code>cutOffFree</code>:</dt><dd>boolean value indicating if a cut-of-free analysis has been performed.</dd> </dl> 

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This class is used to encode the results of the pathway analysis performed by the function <code><a href="pe" rd-options="">pe</a></code>.

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peRes-class: Pathway-Express result class

Description

Arguments

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Details

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