getTipDistribution-methods

getTipDistribution,PhenotypicACDC-method

getTipDistribution,PhenotypicADiag-method

getTipDistribution,PhenotypicBM-method

getTipDistribution,PhenotypicDD-method

getTipDistribution,PhenotypicGMM-method

getTipDistribution,PhenotypicModel-method

getTipDistribution,PhenotypicOU-method

getTipDistribution,PhenotypicPM-method

Computes the mean and variance of the tip trait distribution under a specified model of trait evolution.

methods

Implements macroevolutionary analyses on phylogenetic trees. See
Morlon et al. (2010) <DOI:10.1371/journal.pbio.1000493>, Morlon et al. (2011)
<DOI:10.1073/pnas.1102543108>, Condamine et al. (2013) <DOI:10.1111/ele.12062>,
Morlon et al. (2014) <DOI:10.1111/ele.12251>, Manceau et al. (2015) <DOI:10.1111/ele.12415>,
Lewitus & Morlon (2016) <DOI:10.1093/sysbio/syv116>, Drury et al. (2016) <DOI:10.1093/sysbio/syw020>,
Manceau et al. (2016) <DOI:10.1093/sysbio/syw115>, Morlon et al. (2016) <DOI:10.1111/2041-210X.12526>, Clavel & Morlon (2017) <DOI:10.1073/pnas.1606868114>,
Drury et al. (2017) <DOI:10.1093/sysbio/syx079>, Lewitus & Morlon (2017) <DOI:10.1093/sysbio/syx095>,
Drury et al. (2018) <DOI:10.1371/journal.pbio.2003563>, Clavel et al. (2019) <DOI:10.1093/sysbio/syy045>, Maliet et al. (2019) <DOI:10.1038/s41559-019-0908-0>,
Billaud et al. (2019) <DOI:10.1093/sysbio/syz057>, Lewitus et al. (2019) <DOI:10.1093/sysbio/syz061>,
Aristide & Morlon (2019) <DOI:10.1111/ele.13385>, Maliet et al. (2020) <DOI:10.1111/ele.13592>, Drury et al. (2021) <DOI:10.1371/journal.pbio.3001270>,
Perez-Lamarque & Morlon (2022) <DOI:10.1111/mec.16478>, Perez-Lamarque et al. (2022) <DOI:10.1101/2021.08.30.458192>, Mazet et al. (2023) <DOI:10.1111/2041-210X.14195>, Drury et al. (2024) <DOI:10.1016/j.cub.2023.12.055>.

H<c3><a9>l<c3><a8>ne Morlon

RPANDA

Phylogenetic ANalyses of DiversificAtion

Hélène Morlon

Eric Lewitus

Fabien Condamine

Marc Manceau

Julien Clavel

Jonathan Drury

Olivier Billaud

Odile Maliet

Leandro Aristide

Benoit Perez-Lamarque

Nathan Mazet

getTipDistribution-methods function

<dl><dt><code>signature(object = "PhenotypicModel")</code></dt>
<dd>In the most general case, this function computes the expectation vector and the variance-covariance matrix using a numerical integration procedure that may take time.</dd>
<dt><code>signature(object = "PhenotypicACDC")</code></dt>
<dd>The function has been optimized for this subclass.</dd>
<dt><code>signature(object = "PhenotypicADiag")</code></dt>
<dd>The function has been optimized for this subclass.</dd>
<dt><code>signature(object = "PhenotypicBM")</code></dt>
<dd>The function has been optimized for this subclass.</dd>
<dt><code>signature(object = "PhenotypicDD")</code></dt>
<dd>The function has been optimized for this subclass.</dd>
<dt><code>signature(object = "PhenotypicGMM")</code></dt>
<dd>The function has been optimized for this subclass.</dd>
<dt><code>signature(object = "PhenotypicOU")</code></dt>
<dd>The function has been optimized for this subclass.</dd>
<dt><code>signature(object = "PhenotypicPM")</code></dt>
<dd>The function has been optimized for this subclass.</dd>
</dl>

Methods

Distribution of tip trait values. — getTipDistribution-methods

<dl>

<dt><code>signature(object = "PhenotypicModel")</code></dt>
<dd>In the most general case, this function computes the expectation vector and the variance-covariance matrix using a numerical integration procedure that may take time.</dd>


<dt><code>signature(object = "PhenotypicACDC")</code></dt>
<dd>The function has been optimized for this subclass.</dd>


<dt><code>signature(object = "PhenotypicADiag")</code></dt>
<dd>The function has been optimized for this subclass.</dd>


<dt><code>signature(object = "PhenotypicBM")</code></dt>
<dd>The function has been optimized for this subclass.</dd>


<dt><code>signature(object = "PhenotypicDD")</code></dt>
<dd>The function has been optimized for this subclass.</dd>


<dt><code>signature(object = "PhenotypicGMM")</code></dt>
<dd>The function has been optimized for this subclass.</dd>


<dt><code>signature(object = "PhenotypicOU")</code></dt>
<dd>The function has been optimized for this subclass.</dd>


<dt><code>signature(object = "PhenotypicPM")</code></dt>
<dd>The function has been optimized for this subclass.</dd>


</dl>

Distribution of tip trait values.

getTipDistribution-methods: Distribution of tip trait values.

Description

Arguments

Methods

References