RPPanalyzer (version 1.0.2)

remove.arrays: Remove arrays from a RPPA data list

Description

Removes arrays from the RPPA data set which are not used in following calculations.

Usage

remove.arrays(x, param = "target", arrays2rm = c("protein", "blank", "housekeeping"))

Arguments

x

List with RPPA data set

param

charater describing a row in the arraydescription (column in slidedescription file)

arrays2rm

character defining the arrays to remove

Value

• expression
  matrix with protein expression data
• expression_b
  matrix with protein expression or background data depending on the data input
• arraydescription
  data frame with feature data
• sampledescription
  data frame with pheno data

Examples

library(RPPanalyzer)
data(dataIII)
DT <- remove.arrays(dataIII, param = "target", arrays2rm = c("protein"))