RPPanalyzer (version 1.0.2)

rppa2boxplot: Draw boxplots of an RPPA data set.

Description

Draws boxplots of groups of an RPPA data set and compares the expression values to a reference group.

Usage

rppa2boxplot(x, param = "tissue", wilcoxtest = FALSE, control = "normal", file = "boxplot_groups.pdf")

Arguments

x

List with RPPA data with aggregated replicate spots

param

character describing the phenodata that should be analyzed

wilcoxtest

logical. If true, a wilcoxon test is performed on the groups found in param.

control

Character describing the sample group of param that serves as reference in the wilcoxon test.

file

Title of the file that will be exported.

Value

• Generates a PDF file

Examples

library(RPPanalyzer)
	
	data(dataIII)
	dataIII_median <- sample.median(dataIII)
	rppa2boxplot(dataIII_median,param="rank",control="vx",wilcoxtest=TRUE)