RPPanalyzer (version 1.0.4)

plotQC: Plot target and blank signal from RPPA control samples

Description

Plots target and blank signal from control samples of an RPPA data set in one plot. Exports pdf file.

Usage

plotQC(x, file = "target_vs_blank.pdf", arrays2rm = c("protein"))

Arguments

x

RPPA data list as output from read.Data

file

name of the PDF file

arrays2rm

character describing the arrays that dont have be plotted

Value

• generates a PDF file

Details

This function genrates scatter plots in a pdf file from not yet normalized, serially diluted control samples (annotated as control in the sample_type column of the sampledescription file) of RPPA data to get an impression of the antibody dynamic. An array with blank as target description is needed.

Examples

library(RPPanalyzer)
data(dataIII)

plotQC(dataIII,file="plotQC.pdf")