RPPanalyzer (version 1.0.5)

plotMeasurementsQC: Scatter Plots from an RPPA data

Description

Plots the blank signals and the target specific signals of an RPPA data list in a PDF file.

Usage

plotMeasurementsQC(x, file = "QC_plots.pdf", arrays2rm = c("protein"))

Arguments

x

RPPA data list as output from read.Data

file

name of the PDF file that will be exported

arrays2rm

character describing the arrays that dont have be plotted

Value

• Genrates a PDF file

Details

This function genrates scatter plots in a pdf file from not yet normalized samples (annotated as measurement in the sample_type column of the sampledescription file) of RPPA data to get an impression of the distance from the blank signal to the target specific signal. An array with blank as target description is needed.

Examples

library(RPPanalyzer)
	data(dataIII)
   plotMeasurementsQC(dataIII,file="control_plot.pdf")