RPesto (version 0.1.4)

Phylogenetic Estimation of Shifts in the Tempo of Origination

Description

Implements diversification analyses using the phylogenetic birth-death-shift model. It leverages belief propagation techniques to calculate branch-specific diversification rates, see Kopperud & Hoehna (2025) .

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Version

Install

install.packages('RPesto')

Monthly Downloads

124

Version

0.1.4

License

MIT + file LICENSE

Maintainer

Bjørn Tore Kopperud

Last Published

November 26th, 2025

Functions in RPesto (0.1.4)

RPesto-package

RPesto: Phylogenetic Estimation of Shifts in the Tempo of Origination (in R)

Phylogeny

Phylogeny constructor

reexports

Objects exported from other packages

primates

Primates phylogenetic tree

fit_cbd

fits the constant-rate birth-death model

fit_bds

fits the bds model