disentangle

The <code>ripsDiag</code> function in the <code>TDA</code> package produces
very different results depending on whether you invoke it on a data
matrix (expressed in terms of specific data coordinates) or a distance
matrix (expressed as abstract indices). This function converts the
specific coordinates into indices, allowing one to more easily plot
different views of the data structures.

 manip 

Visualizations to explain the results of a topological
data analysis. The goal of topological data analysis is to identify
persistent topological structures, such as loops (topological circles)
and voids (topological spheres), in data sets. The output of an
analysis using the 'TDA' package is a Rips diagram (named after the
mathematician Eliyahu Rips). The goal of 'RPointCloud' is to fill in
these holes in the data by providing tools to visualize the features
that help explain the structures found in the Rips diagram. See McGee
and colleagues (2024) <doi:10.1101/2024.05.16.593927>.

Kevin Coombes

RPointCloud

Visualizing Topological Loops and Voids

Kevin R. Coombes

Jake Reed

RB McGee

disentangle function

<dl> <dt>rips</dt>
<dd>A Rips <code>diagram</code> produced from a data matrix using
 the <code>TDA</code> package.</dd> <dt>dataset</dt>
<dd>The original dataset used to create the <code>rips</code> object.</dd> <dt>digits</dt>
<dd>The number of digits to use when matching values.</dd></dl>

Arguments

Kevin R. Coombes &lt;krc@silicovore.com&gt;

Author

Disentangling Rips Diagrams From Their Initial Data Coordinates — disentangle

<dl>

 <dt>rips</dt>
<dd>A Rips <code>diagram</code> produced from a data matrix using
 the <code>TDA</code> package.</dd>

 <dt>dataset</dt>
<dd>The original dataset used to create the <code>rips</code> object.</dd>

 <dt>digits</dt>
<dd>The number of digits to use when matching values.</dd>

</dl>

disentangle: Disentangling Rips Diagrams From Their Initial Data Coordinates

Description

Usage

Value

Arguments

Author

Details

Examples