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RRPP

RRPP is a software package for evaluating linear models with residual randomization in a permutation procedure. S3 Generic used for the lm function can also be used with lm.rrpp, with the chief difference being that lm coefficients, fitted values, and residuals are estimated many times with random permutations of data.

To install the current RRPP R-package from CRAN:

Within R:

install.packages("RRPP")

To install the current version of geomorph R-package from Github using devtools:

Within R:

install.packages("devtools")

devtools::install_github("mlcollyer/RRPP")

The version on github is updated regularly, especially if errors or programming bugs are discovered.

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Version

Install

install.packages('RRPP')

Monthly Downloads

1,822

Version

0.6.2

License

GPL (>= 3)

Issues

0

Pull Requests

0

Stars

4

Forks

1

Maintainer

Michael Collyer

Last Published

January 11th, 2021

Functions in RRPP (0.6.2)

coef.lm.rrpp

coef for lm.rrpp model fits
PupfishHeads

Landmarks on pupfish heads
classify

Deprecated functions in RRPP
RRPP-package

Linear Model Evaluation with Randomized Residual Permutation Procedures
add.tree

Plot tool to add phylogenetic trees to ordination plots
PlethMorph

Plethodon comparative morphological data
add.trajectories

Plot Function for RRPP
Pupfish

Landmarks on pupfish
fitted.lm.rrpp

Extract fitted values
anova.lm.rrpp

ANOVA for lm.rrpp model fits
plot.lm.rrpp

Plot Function for RRPP
manova.update

MANOVA update for lm.rrpp model fits
motionpaths

Simulated motion paths
lm.rrpp

Linear Model Evaluation with a Randomized Residual Permutation Procedure
model.matrix.lm.rrpp

Extract the model design matrix from an lm.rrpp object
predict.lm.rrpp

predict for lm.rrpp model fits
plot.trajectory.analysis

Plot Function for RRPP
print.lm.rrpp

Print/Summary Function for RRPP
print.model.comparison

Print/Summary Function for RRPP
print.ordinate

Print/Summary Function for RRPP
ordinate

Ordination tool for data aligned to another matrix
plot.model.comparison

Plot Function for RRPP
model.comparison

Model Comparisons, in terms of the log-likelihood or covariance trace
print.summary.lm.rrpp

Print/Summary Function for RRPP
summary.coef.lm.rrpp

Print/Summary Function for RRPP
print.predict.lm.rrpp

Print/Summary Function for RRPP
print.pairwise

Print/Summary Function for RRPP
print.summary.pairwise

Print/Summary Function for RRPP
trajectory.analysis

Quantify and compare shape change trajectories
terms.lm.rrpp

Extract the terms from an lm.rrpp object
summary.lm.rrpp

Print/Summary Function for RRPP
plot.predict.lm.rrpp

Plot Function for RRPP
model.frame.lm.rrpp

Extract model frame from a lm.rrpp object
pairwise

Pairwise comparisons of lm.rrpp fits
prep.lda

Linear discriminant function for lm.rrpp model fits
print.classify

Print/Summary Function for RRPP
plot.ordinate

Plot Function for RRPP
summary.predict.lm.rrpp

Print/Summary Function for RRPP
summary.pairwise

Print/Summary Function for RRPP
print.summary.trajectory.analysis

Print/Summary Function for RRPP
summary.trajectory.analysis

Print/Summary Function for RRPP
summary.ordinate

Print/Summary Function for RRPP
print.summary.ordinate

Print/Summary Function for RRPP
print.summary.manova.lm.rrpp

Print/Summary Function for RRPP
summary.anova.lm.rrpp

Print/Summary Function for RRPP
print.coef.lm.rrpp

Print/Summary Function for RRPP
summary.classify

Print/Summary Function for RRPP
vec.cor.matrix

Support function for RRPP
summary.model.comparison

Print/Summary Function for RRPP
summary.manova.lm.rrpp

Print/Summary Function for RRPP
rrpp.data.frame

Create a data frame for lm.rrpp analysis
reveal.model.designs

Reveal model designs used in lm.rrpp fit
print.trajectory.analysis

Print/Summary Function for RRPP
residuals.lm.rrpp

Extract residuals
print.anova.lm.rrpp

Print/Summary Function for RRPP