RRphylo (version 2.5.0)

makeL: Matrix of branch lengths along root-to-tip paths

Description

This function produces a \(n * m\) matrix, where n=number of tips and m=number of branches (i.e. n + number of nodes). Each row represents the branch lengths aligned along a root-to-tip path.

Usage

makeL(tree)

Arguments

tree

a phylogenetic tree. The tree needs not to be ultrametric and fully dichotomous.

Value

The function returns a \(n * m\) matrix of branch lengths for all root-to-tip paths in the tree (one per species).

Examples

# NOT RUN {
data("DataApes")
DataApes$Tstage->Tstage

makeL(tree=Tstage)
# }