RTCGA (version 1.2.2)

getData,FirehoseData-method: Export data from FirehoseData object

Description

Export data from FirehoseData object

Usage

## S3 method for class 'FirehoseData':
getData(object, type = "", platform = NULL,
  CN = "All")

Arguments

object

A FirehoseData object

type

A data type to be exported (Data types can be seen by typing show(objectname))

platform

A list id for data types that may come from multiple platform (such as mRNAArray)

CN

A copy number data type (Default: 'All') (Possible values 'All' or 'Thresholed')

Value

• Returns matrix or data frame depends on data type

Examples

data(RTCGASample)
sampleClinical = getData(RTCGASample,"Clinical")
sampleClinical = getData(RTCGASample,"RNASeqGene")