plotCOs

Obtain number of Cross-Over events per sample and chromosome.

Our method integrates information from all sequenced samples, thus avoiding loss of alleles due to low coverage. Moreover, it increases the statistical power to uncover sequencing or alignment errors <doi:10.1093/plphys/kiad191>.

Rafael Campos-Martin

RTIGER

HMM-Based Model for Genotyping and Cross-Over Identification

Sophia Schmickler

Manish Goel

Korbinian Schneeberger

Achim Tresch

plotCOs function

<dl><dt>object</dt>
<dd>a RViterbi object.</dd>
<dt>file</dt>
<dd>file where to save the plot for CO numbers</dd></dl>

Arguments

Obtain number of Cross-Over events per sample and chromosome. — plotCOs

<dl>

<dt>object</dt>
<dd>a RViterbi object.</dd>


<dt>file</dt>
<dd>file where to save the plot for CO numbers</dd>

</dl>

plotCOs: Obtain number of Cross-Over events per sample and chromosome.

Description

Usage

Value

Arguments

Examples