RTN (version 1.10.0)

avs.plot1: Plot results from AVS methods, single plots.

Description

This function takes an AVS object and plots results from the VSE and EVSE methods.

Usage

avs.plot1(object, what="vse", fname=what, ylab="genomic annotation", 
xlab="Number of clusters mapping to genomic annotation", breaks="Sturges", 
maxy=200, pValueCutoff=1e-2, width=8, height=3)

Arguments

object

an object of class 'AVS' AVS-class.

what

a character value specifying which analysis should be used. Options: "vse" and "evse".

fname

a character value specifying the name of output file.

ylab

a character value specifying the y-axis label.

xlab

a character value specifying the x-axis label.

breaks

breaks in the histogram, see hist function.

maxy

a numeric value specifying the max y-limit.

pValueCutoff

a numeric value specifying the cutoff for p-values considered significant.

width

a numeric value specifying the width of the graphics region in inches.

height

a numeric value specifying the height of the graphics region in inches.

Examples

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