Usage
avs.plot2(object, what="evse", fname=what, width=14, height=2.5, rmargin=1,
bxseq=seq(-4,8,2), decreasing=TRUE, ylab="Annotation",
xlab="Clusters of risk-associated and linked SNPs", tfs=NULL)
Arguments
what
a single character value specifying which analysis should be used. Options: "vse" and "evse".
fname
a character value specifying the name of output file.
height
a numeric value specifying the height of the graphics region in inches.
width
a numeric value specifying the width of the graphics region in inches.
rmargin
a numeric value specifying the right margin size in inches.
bxseq
a numeric vector specifying which x-axis tickpoints are to be drawn.
decreasing
a logical value, used to sort by EVSE scores.
ylab
a character value specifying the y-axis label.
xlab
a character value specifying the x-axis label (on the top of the grid image).
tfs
an optional vector with annotation identifiers (e.g. transcription factor).