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RTopper (version 1.18.0)

This package is designed to perform Gene Set Analysis across multiple genomic platforms

Description

the RTopper package is designed to perform and integrate gene set enrichment results across multiple genomic platforms.

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Version

Version

1.18.0

License

GPL (>= 3)

Maintainer

Luigi Marchionni

Last Published

February 15th, 2017

Functions in RTopper (1.18.0)

runBatchGSE

To perform GSE analysis over multipple experiments and functional themes
intScores

A list of genomic scores integrated across distinct data sets to be used to run the examples in the RTopper package
fgsList

A list of Functional Gene Set (FGS) to be used to run the examples in the RTopper package
pheno

A test dataset for the RTopper package
combineGSE

Combines GSE results
RTopper-package

A package to perform run Gene Set Enrichment across genomic platforms
computeDrStat

Computes gene-to-phenotype associations scores
adjustPvalGSE

Multiple testing correction
sepScores

A list of separate gene-to-phenotype association scores, obtained indipendently for each distinct data set to be used to run the examples in the RTopper package
dat

A test dataset for the RTopper package
gseResultsSep

A list of separated gene set enrichment p-values to be used to run the examples in the RTopper package
convertToDr

Converts genomic data to a list suitable for computing gene-to-phenotype scores