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RUVIIIC (version 1.0.19)

RUV-III-C

Description

Variations of Remove Unwanted Variation-III (RUV-III) known as RUV-III-C (RUV-III Complete). RUV-III performs normalisation using negative control variables and replication. RUV-III-C extends this method to cases where the data contains missing values, by applying RUV-III to complete subsets of the data. Originally designed for SWATH-MS proteomics datasets. Poulos et al. (2020) .

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Version

Install

install.packages('RUVIIIC')

Monthly Downloads

35

Version

1.0.19

License

MIT + file LICENSE

Maintainer

Rohan Shah

Last Published

April 23rd, 2021

Functions in RUVIIIC (1.0.19)

RUVIII_C_Varying

RUV-III-C, varying controls
RUVIII_C

RUV-III-C
omp_set_num_threads

Set or get the number of OpenMP threads
RUVIII_C_Varying_residual_dimension

Compute amount of replication, assuming varying controls
sisPeptides

List of stable isotope-labelled standard (SIS) peptides from the cross-lab study of Collins et al (2017)
peptideData

Peptide data from the cross-lab study of Collins et al (2017)