produce.cutoff.warning

Summary statistics table from limma or DEseq2, where each row is a gene.

data

The column name of the False Discovery Rate (FDR) in the summary statistics table.

FDRflag

This function processes summary statistics table generated by differential expression analysis
like <code>limma</code> or <code>DESeq2</code> and produces a warning about pvalue or FDR minimum value

Automate downstream visualization & pathway analysis in RNAseq analysis. 'RVA' is a collection of functions that efficiently visualize RNAseq differential expression analysis result from summary statistics tables. It also utilize the Fisher's exact test to evaluate gene set or pathway enrichment in a convenient and efficient manner.

produce.cutoff.warning: Create a warning about pvalue or FDR minimum value

Description

Usage

Arguments