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Install
install.packages('RVAideMemoire')
Monthly Downloads
5,481
Version
0.9-69-3
License
GPL-2
Maintainer
Maxime Herve9
Last Published
May 14th, 2018
Functions in RVAideMemoire (0.9-69-3)
Search functions
MVA.anova
Type II permutation test for constrained multivariate analyses
OR.multinom
Odds-ratio (multinomial regression)
MVA.plot
Plotting of multivariate analyses
chisq.bin.exp
Expected counts for comparison of response probabilities to given values
cond.multinom
Condition number of the Hessian matrix of a multinomial log-linear model
chisq.bintest
Pearson's Chi-squared test for binary variables
byf.qqnorm
QQ-plot for factor levels
byf.mshapiro
Shapiro-Wilk test for factor levels
PLSDA.VIP
Variable Importance in the Projection (VIP)
chisq.exp
Expected counts for comparison of proportions to given values
cochran.qtest
Cochran's Q test
cramer
Cramer's association coefficient
mqqnorm
Multivariate normality QQ-Plot
cramer.test
Cramer's association coefficient
MVA.scores
Scores of multivariate analyses
mood.medtest
Mood's median test
chisq.multcomp
Pairwise comparisons after a chi-squared goodness-of-fit test
multtest.cor
Univariate correlation test for multiple variables
MVA.scoreplot
Score plot of multivariate analyses
MVA.synt
Synthesis quality of multivariate analyses
MVA.pairplot
Paired plot of multivariate analyses
multtest.gp
Univariate comparison of groups for multiple variables
MVA.test
Significance test based on cross (model) validation
deprecated
Deprecated functions in RVAideMemoire package
pairwise.perm.t.test
Pairwise permutation t tests
pairwise.perm.var.test
Pairwise permutation F tests
RVAideMemoire-package
Testing and Plotting Procedures for Biostatistics
adonis.II
Type II permutation MANOVA using distance matrices
dummy
Dummy responses
MVA.trajplot
Trajectory plot of multivariate analyses
fp.test
Fligner-Policello test
fisher.multcomp
Pairwise comparisons using Fisher's exact test
perm.anova
Permutation Analysis of Variance
byf.shapiro
Shapiro-Wilk test for factor levels
perm.bartlett.test
Permutation Bartlett's test of homogeneity of variances
multinomial.test
Exact multinomial test
reg.ci
Confidence intervals of a simple linear regression
back.emmeans
Back-transformation of EMMeans
bootstrap
Bootstrap
byf.hist
Histogram for factor levels
cor.conf
Equality of a Pearson's linear correlation coefficient to a given value
cov.test
Significance test for the covariance between two datasets
cdf.discrete
Cumulative Distribution Function of a known discrete distribution
byf.mqqnorm
QQ-plot for factor levels
cor.multcomp
Comparison of several Pearson's linear correlation coefficients
chisq.theo.bintest
Pearson's Chi-squared test for comparison of response probabilities to given values
multinomial.theo.multcomp
Pairwise comparisons after an exact multinomial test for given probabilities
pairwise.mood.medtest
Pairwise Mood's median tests
cox.resid
Martingale residuals of a Cox model
scat.cr
"Correlation" of variables to axes in MCA or mix analyses
chisq.theo.multcomp
Pairwise comparisons after a chi-squared test for given probabilities
user.cont
User defined contrasts for EMMeans
dunn.test
Dunn's test
coord.proj
Coordinates of projected points
loc.slp
Slope of a hand-defined line
cor.2comp
Comparison of 2 Pearson's linear correlation coefficients
cv
Coefficient of variation
wald.ptheo.multinom.test
Wald tests for comparison of proportions to theoretical values
dendro.gp
Dendrogram and number of groups to be chosen
logis.fit
Graphical adujstment of a simple binary logistic regression to data
ord.rw
Re-computation of an ordination using given row weights
pairwise.perm.manova
Pairwise permutation MANOVAs
overdisp.glmer
Estimation of overdispersion with
glmer
models
pcor
(Semi-)Partial correlation
pcor.test
Tests for (semi-)partial association/correlation between paired samples
logis.noise
Creating a nls model for logistic regression from fitted values of a glm model
mod
Mode
perm.cor.test
Permutation Pearson's correlation test
perm.var.test
Permutation F test to compare two variances
pairwise.CDA.test
Pairwise comparisons for CDA
fisher.bintest
Fisher's exact test for binary variables
ind.contrib
Individual contributions in regression
least.rect
Least rectangles linear regression
pairwise.G.test
Pairwise comparisons for proportions using G-tests
perm.t.test
Permutation Student's t-test
plotresid
Simple analysis of model residuals
se
Standard error
seq2
Sequence generation
pairwise.to.groups
Letter summary of similarities and differences
test.multinom
Significance tests of coefficients (multinomial regression)
prop.bin.multcomp
Pairwise comparisons after a test for given probabilities
mshapiro.test
Shapiro-Wilk multivariate normality test
pairwise.var.test
Pairwise F tests
to.dudi
Synthesis quality of multivariate analyses
prop.multcomp
Pairwise comparisons after a test for given proportions
plotsurvivors
Survivor curve
stand
Standardization of a data frame based on another data frame
splitf
Divide into groups respecting relative proportions
pairwise.MVA.test
Pairwise permutation tests based on cross (model) validation
predict.CDA.cv
Predict method for cross-validated CDA submodels
multinomial.multcomp
Pairwise comparisons after an exact multinomial test
prop.multinom
Proportions and standard errors
prop.multinom.test
Wald tests for comparison of proportions
pairwise.factorfit
Pairwise comparisons of groups displayed on a factorial map
spearman.ci
Confidence interval of a Spearman's rank correlation coefficient
predict.MVA.cv
Predict method for cross-validated submodels
predict.coadisc
Predict method for CDA
spearman.cor.multcomp
Comparison of several Spearman's rank correlation coefficients
wilcox.signtest
Wilcoxon sign test
wmean
Weighted arithmetic mean
rating.emmeans
EMMeans for Cumulative Link (Mixed) Models
wilcox.paired.multcomp
Non parametric pairwise comparisons for paired data
wald.ptheo.test
Wald test for comparison of a proportion to a theoretical value
rating.prob
Observed rating frequencies
DIABLO.test
Significance test based on cross-validation
CDA.cv
Cross validation
G.bintest
G-test for binary variables
DIABLO.cv
Cross validation
CDA.test
Significance test for CDA
CvM.test
Two-sample Cramer-von Mises test
G.theo.multcomp
Pairwise comparisons after a G-test for given probabilities
G.test
G-test
G.multcomp
Pairwise comparisons after a G-test
MVA.biplot
Biplot of multivariate analyses
Anova.clm
Anova Tables for Cumulative Link (Mixed) Models
MVA.cor
Correlations of multivariate analyses
GPA.test
Significance test for GPA
MVA.cv
Cross validation
MVA.corplot
Correlation circle of multivariate analyses
MVA.loadplot
Loading plot of multivariate analyses
MVA.cmv
Cross model validation
MVA.load
Loadings of multivariate analyses