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0.9-81-2
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Install
install.packages('RVAideMemoire')
Monthly Downloads
5,099
Version
0.9-81-2
License
GPL-2
Maintainer
Maxime Herve9
Last Published
February 21st, 2022
Functions in RVAideMemoire (0.9-81-2)
Search functions
G.multcomp
Pairwise comparisons after a G-test
G.theo.multcomp
Pairwise comparisons after a G-test for given probabilities
Anova.clm
Anova Tables for Cumulative Link (Mixed) Models
DIABLO.test
Significance test based on cross-validation
CDA.test
Significance test for CDA
G.bintest
G-test for binary variables
GPA.test
Significance test for GPA
CDA.cv
Cross validation
G.test
G-test
DIABLO.cv
Cross validation
MVA.load
Loadings of multivariate analyses
MVA.pairplot
Paired plot of multivariate analyses
MVA.biplot
Biplot of multivariate analyses
MVA.anova
Type II permutation test for constrained multivariate analyses
MVA.cmv
Cross model validation
MVA.cor
Correlations of multivariate analyses
RVAideMemoire-package
Testing and Plotting Procedures for Biostatistics
PLSDA.VIP
Variable Importance in the Projection (VIP)
MVA.synt
Synthesis quality of multivariate analyses
byf.mqqnorm
QQ-plot for factor levels
MVA.test
Significance test based on cross (model) validation
byf.mshapiro
Shapiro-Wilk test for factor levels
MVA.scores
Scores of multivariate analyses
cdf.discrete
Cumulative Distribution Function of a known discrete distribution
MVA.scoreplot
Score plot of multivariate analyses
cox.resid
Martingale residuals of a Cox model
MVA.plot
Plotting of multivariate analyses
chisq.bin.exp
Expected counts for comparison of response probabilities to given values
chisq.bintest
Pearson's Chi-squared test for binary variables
MVA.trajplot
Trajectory plot of multivariate analyses
chisq.exp
Expected counts for comparison of proportions to given values
OR.multinom
Odds-ratio (multinomial regression)
cov.test
Significance test for the covariance between two datasets
cramer
Cramer's association coefficient
MVA.loadplot
Loading plot of multivariate analyses
cor.multcomp
Comparison of several Pearson's linear correlation coefficients
least.rect
Least rectangles linear regression
loc.slp
Slope of a hand-defined line
coord.proj
Coordinates of projected points
pairwise.perm.manova
Pairwise permutation MANOVAs
cond.multinom
Condition number of the Hessian matrix of a multinomial log-linear model
fisher.bintest
Fisher's exact test for binary variables
multtest.cor
Univariate correlation test for multiple variables
multinomial.theo.multcomp
Pairwise comparisons after an exact multinomial test for given probabilities
pairwise.G.test
Pairwise comparisons for proportions using G-tests
plotsurvivors
Survivor curve
pairwise.MVA.test
Pairwise permutation tests based on cross (model) validation
predict.CDA.cv
Predict method for cross-validated CDA submodels
byf.qqnorm
QQ-plot for factor levels
prop.multcomp
Pairwise comparisons after a test for given proportions
prop.bin.multcomp
Pairwise comparisons after a test for given probabilities
se
Standard error
pairwise.perm.t.test
Pairwise permutation t tests
plotresid
Simple analysis of model residuals
perm.var.test
Permutation F test to compare two variances
scat.cr
"Correlation" of variables to axes in MCA or mix analyses
stand
Standardization of a data frame based on another data frame
byf.shapiro
Shapiro-Wilk test for factor levels
chisq.multcomp
Pairwise comparisons after a chi-squared goodness-of-fit test
chisq.theo.multcomp
Pairwise comparisons after a chi-squared test for given probabilities
cochran.qtest
Cochran's Q test
chisq.theo.bintest
Pearson's Chi-squared test for comparison of response probabilities to given values
logis.noise
Creating a nls model for logistic regression from fitted values of a glm model
logis.fit
Graphical adujstment of a simple binary logistic regression to data
fisher.multcomp
Pairwise comparisons using Fisher's exact test
multtest.gp
Univariate comparison of groups for multiple variables
test.multinom
Significance tests of coefficients (multinomial regression)
elogis
Empirical logistic transformation
fp.test
Fligner-Policello test
dummy
Dummy responses
ind.contrib
Individual contributions in regression
multinomial.multcomp
Pairwise comparisons after an exact multinomial test
MVA.corplot
Correlation circle of multivariate analyses
cramer.test
Cramer's association coefficient
cv
Coefficient of variation
mqqnorm
Multivariate normality QQ-Plot
mshapiro.test
Shapiro-Wilk multivariate normality test
to.dudi
Synthesis quality of multivariate analyses
predict.MVA.cv
Predict method for cross-validated submodels
multinomial.test
Exact multinomial test
predict.coadisc
Predict method for CDA
p.beta
Rescaling of a [0,1] variable into the (0,1) interval (and vice-versa)
MVA.cv
Cross validation
quasibinomial.QAIC
QAIC(c) calculation with GLMs of the quasi- family
rating.emmeans
EMMeans for Cumulative Link (Mixed) Models
splitf
Divide into groups respecting relative proportions
spearman.cor.multcomp
Comparison of several Spearman's rank correlation coefficients
pairwise.CDA.test
Pairwise comparisons for CDA
wmean
Weighted arithmetic mean
user.cont
User defined contrasts for EMMeans
pcor
(Semi-)Partial correlation
pcor.test
Tests for (semi-)partial association/correlation between paired samples
back.emmeans
Back-transformation of EMMeans
bootstrap
Bootstrap
adonis.II
Type II permutation MANOVA using distance matrices
reg.ci
Confidence intervals of a simple linear regression
rating.prob
Observed rating frequencies
wilcox.paired.multcomp
Non parametric pairwise comparisons for paired data
byf.hist
Histogram for factor levels
pairwise.factorfit
Pairwise comparisons of groups displayed on a factorial map
multtest.gp.bin
Univariate comparison of groups for multiple binary variables
wilcox.signtest
Wilcoxon sign test
perm.t.test
Permutation Student's t-test
perm.cor.test
Permutation Pearson's correlation test
pairwise.mood.medtest
Pairwise Mood's median tests
wald.ptheo.multinom.test
Wald tests for comparison of proportions to theoretical values
wald.ptheo.test
Wald test for comparison of a proportion to a theoretical value
cor.2comp
Comparison of 2 Pearson's linear correlation coefficients
cor.conf
Equality of a Pearson's linear correlation coefficient to a given value
dendro.gp
Dendrogram and number of groups to be chosen
deprecated
Deprecated functions in RVAideMemoire package
mod
Mode
mood.medtest
Mood's median test
ord.rw
Re-computation of an ordination using given row weights
overdisp.glmer
Estimation of overdispersion with
glmer
models
pairwise.perm.var.test
Pairwise permutation F tests
pairwise.var.test
Pairwise F tests
perm.bartlett.test
Permutation Bartlett's test of homogeneity of variances
perm.anova
Permutation Analysis of Variance
prop.multinom
Proportions and standard errors
prop.multinom.test
Wald tests for comparison of proportions
spearman.ci
Confidence interval of a Spearman's rank correlation coefficient
seq2
Sequence generation