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RVFam (version 1.1)

Rare Variants Association Analyses with Family Data

Description

The RVFam package provides functions to perform single SNP association analyses and gene-based tests for continuous, binary and survival traits against sequencing data (e.g. exome chip) using family data.

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Version

Install

install.packages('RVFam')

Monthly Downloads

5

Version

1.1

License

GPL (>= 2)

Maintainer

Ming-Huei Chen

Last Published

March 10th, 2015

Functions in RVFam (1.1)

lme.EC

function for testing a single/pooled variant for continuous traits with family data using Linear Mixed Effects model
lme.ped

function of single SNP analysis and gene-based tests for continuous traits with family data using Linear Mixed Effects model
gc.fun

function that does genomic control correction to single SNP analysis, sum of square test and RData for survival trait analysis
coxph.EC

function for testing a single/pooled variant for survival traits with family data using Cox proportional hazards regression model
glmm.EC

function for testing a single/pooled variant for continuous traits with family data using generalized linear mixed effects model
snpinfo

SNP information RData
glmm.binped

function of single SNP analysis and gene-based tests for binary traits with family data using generalized linear mixed effects model
coxph.ped

function of single SNP analysis and gene-based tests for survival traits with family data using Cox proportional hazards regression model
rsnpsingene.cor

SNP correlation matrix RData
RVFam-package

Rare Variants Association Analyses with Family Data