Preparation.hap.perm

data frame with pedigree information in linkage
format (four columns: family ID, individual ID, father ID, mother
ID). For example the first for columns of a Plink <code>.ped</code> file
or a Plink <code>.bim</code> file.

pedigree

a vector of length(sample size) which
indicates if the subject is founder (<code>generation.id=0</code>),
a child from first generation (<code>generation.id=1</code>), a
child from second generation (<code>generation.id=2</code>), etc.
This vector can be calculated by the
<code>kinship2::kindepth()</code> function.

generation.id


This functions prepares for running the <code><a rd-options="" href="/link/perm.hap?package=RVPedigree&version=0.0.3" data-mini-rdoc="RVPedigree::perm.hap">perm.hap</a></code>
function. The output of this function can be passed to that one.


internal

This is a collection of the five region-based
rare-variant genetic association tests. The following tests are
currently implemented: ASKAT, ASKAT-Normalized, VC-C1, VC-C2 and
VC-C3.

Preparation.hap.perm: Prepare for the haplotype permutation

Description

Usage

Arguments

Value

See Also