perm.hap

haplotypes

a list as output by <code><a rd-options="" href="/link/Preparation.hap.perm?package=RVPedigree&version=0.0.3" data-mini-rdoc="RVPedigree::Preparation.hap.perm">Preparation.hap.perm</a></code>

preplist

a vector of length(sample size) which
indicates if the subject is founder (<code>generation.id=0</code>),
a child from first generation (<code>generation.id=1</code>), a
child from second generation (<code>generation.id=2</code>), etc.
This vector can be calculated by the
<code>kinship2::kindepth()</code> function.

generation.id

internal

This is a collection of the five region-based
rare-variant genetic association tests. The following tests are
currently implemented: ASKAT, ASKAT-Normalized, VC-C1, VC-C2 and
VC-C3.

perm.hap: Permute haplotypes

Description

Usage

Arguments

Value