checkOutputQuality

This function checks that data produced by repeated calls to the
`grabMzmlData()` and `grabMzxmlData()` functions is formatted properly before
it's provided to the user. It checks that all of the requested data has been
obtained and warns if data is found to be empty, misnamed, or has columns of
the wrong type.

R-based access to mass-spectrometry (MS) data. While many packages
exist to process MS data, many of these make it difficult to
access the underlying mass-to-charge ratio (m/z), intensity, and
retention time of the files
themselves. This package is designed to format MS data in a tidy fashion and
allows the user perform the plotting and analysis.

William Kumler

RaMS

R Access to Mass-Spec Data

Ricardo Cunha

Ethan Bass

checkOutputQuality function

<dl><dt>output_data</dt>
<dd>The collected data resulting from repeated calls to
`grabMzmlData()`, after being bound together.</dd>
<dt>grab_what</dt>
<dd>The names of the data requested by the user.</dd></dl>

Arguments

Check that the output data is properly formatted. — checkOutputQuality

<dl>

<dt>output_data</dt>
<dd>The collected data resulting from repeated calls to
`grabMzmlData()`, after being bound together.</dd>


<dt>grab_what</dt>
<dd>The names of the data requested by the user.</dd>

</dl>

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checkOutputQuality: Check that the output data is properly formatted.

Description

Usage

Value

Arguments